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Could Not Find The Head Table

Pietro Join this group Popular White Paper On This Topic 5 Best Practices for Business Intelligence 14Replies Best Answer 0 Mark this reply as the best answer?(Choose carefully, this can't be I think it may have not installed DESeq after all, 'cause R doesn't seem recognize the function "newCountDataSet". Simon masterpiece03-08-2011, 07:54 AMHi Simon, About the attachment, yup, tried to attach larger plot, but the maximum size attachment allowed is only 680x280. Thanks again for your help Emma avm97007-31-2010, 12:23 PMHi Everyone In my Analysis, i am working without any relicates......I trying to find differentially expressed genes using DESeq. check over here

Church services were immediately stopped and Churches closed until the Cardinal was released.Fiction it is, and a besmirching of a man who cannot now speak for himself. Trying to open > > > the tables with QDEC in Unix (RedHat) or Mac (10.6.4) doesn't change > > > the outcome. > > > > > > Any ideas I think it may have not installed DESeq after all, 'cause R doesn't seem recognize the function "newCountDataSet". To see, e.g., the content of rows 7, 12, and 17, write table[ c(7, 12, 17), ] (Note the extra comma!) This should give you a hint what went wrong.

You are trying with release 2.5, that's why you get "package DESeq is not available". It is the sequel to A Rose Without a Thorn. PietroMozzillo replied Nov 28, 2012 Hi, thanks for Your help. We added the TA-sepapp12 to the search head and these errors started after that.

As someone born in St Andrews and living within 15 miles of the Cardinal's Castle, I am distressed by this false and cruel portrayal. We had multiple lookup definitions looking at the same file. I treated only two sample (T1b and T2) trying to mimic my dataset as there is no replicate. All rights reserved.

Sorry about that. Hope I got you right. Why is engine displacement frequently a few CCs below an exact number? http://stackoverflow.com/questions/31640055/rvest-r-not-getting-inner-table Also, when I come to display the results of the most significantly differentially expressed genes the table generated only produces the top 6 genes.

This is fine for looking at the infected and uninfected states but I would also like to examine whether the time course of infection has any effect on gene transcription. Is there anyone who can help me? Is this expected? A summary of the number of medals by sport and the total medals can be obtained with library(rvest) #v. url <- "https://en.wikipedia.org/wiki/United_States_at_the_2012_Summer_Olympics" tb <- read_html(url) %>% html_node("table.wikitable:nth-child(2)") %>% html_table(fill=TRUE) #> head(tb)

The problem is that the size factor estimation tends to round values when you have many genes with only very few counts. https://books.google.com/books?id=AHU_gfad7bYC&pg=PA66&lpg=PA66&dq=Could+Not+Find+The+Head+Table&source=bl&ots=hQBmRL5pLc&sig=Y4oylPz6ka98SShWdTv0RIaaO60&hl=en&sa=X&ved=0ahUKEwjVzv-R3qXQAhUE6CwKHYoEAycQ6AEIODAE I've been trying to use Deseq to analyse the read counts and by following the instructions from the PDF (which btw is very well written and can even be followed by An aging Henry VIII is James V’s royal uncle. The file is automatically recreated if the file does not exist or if it is out of date i think your problem supposed to be here, the diccashe doesnt contain your

Bioconductor releases are synchronised with R releases, so Bioconductor 2.6 goes with R 2.11. check my blog If sample A is sequenced 20% deeper than sample B, then 120 counts in sample A should be considered as equal in expression strength to 100 counts in B. Asked: Oct 02, 2014 at 12:05 AM Seen: 718 times Last updated: Oct 3, '14 Related Questions How to create a lookup table from search 1 Answer How do you filter Answer by mikaelbje Oct 02, 2014 at 02:11 AM Comment 10 |10000 characters needed characters left rus7am · Oct 03, 2014 at 01:58 AM That works, thank you!

Indeed... Diccache.dat, located in the SIEBSRVR_HOME\bin directory, is accessed whenever a server program is started. Manager's Guide to Avoiding 7 Project Portfolio Pitfalls MoreWhitePapers Best Answer 0 Mark this reply as the best answer?(Choose carefully, this can't be changed) Yes | No Saving... this content If you believe this e-mail was sent to you in error and the e-mail > > contains patient information, please contact the Partners Compliance HelpLine at > > http://www.partners.org/complianceline .

string with gene names. PCMag Digital Group AdChoices unused My AccountSearchMapsYouTubePlayNewsGmailDriveCalendarGoogle+TranslatePhotosMoreShoppingWalletFinanceDocsBooksBloggerContactsHangoutsEven more from GoogleSign inHidden fieldsBooksbooks.google.com - This is a story of a young teen that makes an incredible discovery while trying to fine tune moatasemhaj replied Nov 28, 2012 Have you tried to apply DDL?

Also compile it.

Simon Hi Simon! Wolfgang Huber Thanks, Wolfgang! Thanks in advance for any help! You can not have significant results without replicates.

Does Knitr not recognize these functions or am I just going about this completely wrong. Do you have any updates on your DESeq paper? Not what you were looking for? have a peek at these guys But it was giving me some somewhat strange (although possible reasonable) numbers...so I wanted to check....